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1.
7422 Accesses
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Solving a Hamiltonian Path Problem with a bacterial computer
Jordan Baumgardner, Karen Acker, Oyinade Adefuye, Samuel Crowley, Will DeLoache, James O Dickson, Lane Heard, Andrew T Martens, Nickolaus Morton, Michelle Ritter, Amber Shoecraft, Jessica Treece, Matthew Unzicker, Amanda Valencia, Mike Waters, A Malcolm Campbell, Laurie J Heyer, Jeffrey L Poet, Todd T Eckdahl Journal of Biological Engineering 2009, 3:11 (24 July 2009)
Abstract | Full text | PDF | PubMed | F1000 Biology
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Editor’s summary
E. coli cells can be engineered to evaluate possible combinations of expressed genes and determine which is correct given a predetermined outcome, similar to the mathematical Hamiltonian path problem, providing proof of concept for bacterial computers solving other NP-complete problems.
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2.
6456 Accesses
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Engineering bacteria to solve the Burnt Pancake Problem
Karmella A Haynes, Marian L Broderick, Adam D Brown, Trevor L Butner, James O Dickson, W Lance Harden, Lane H Heard, Eric L Jessen, Kelly J Malloy, Brad J Ogden, Sabriya Rosemond, Samantha Simpson, Erin Zwack, A Malcolm Campbell, Todd T Eckdahl, Laurie J Heyer, Jeffrey L Poet Journal of Biological Engineering 2008, 2:8 (20 May 2008)
Abstract | Full text | PDF | PubMed |
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Editor’s summary
E. coli cells can be engineered to sort DNA fragments into a specific order and orientation, similar to the mathematical burnt pancake problem, providing a flexible new tool for manipulating transgenic DNA in vivo.
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3.
5419 Accesses
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Engineering BioBrick vectors from BioBrick parts
Reshma P Shetty, Drew Endy, Thomas F Knight Journal of Biological Engineering 2008, 2:5 (14 April 2008)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
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4.
4588 Accesses
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Measuring the activity of BioBrick promoters using an in vivo reference standard
Jason R Kelly, Adam J Rubin, Joseph H Davis, Caroline M Ajo-Franklin, John Cumbers, Michael J Czar, Kim de Mora, Aaron L Glieberman, Dileep D Monie, Drew Endy Journal of Biological Engineering 2009, 3:4 (20 March 2009)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
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5.
4350 Accesses
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Antimicrobial activities of commercial nanoparticles against an environmental soil microbe, Pseudomonas putida KT2440
Priyanka Gajjar, Brian Pettee, David W Britt, Wenjie Huang, William P Johnson, Anne J Anderson Journal of Biological Engineering 2009, 3:9 (26 June 2009)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
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6.
3871 Accesses
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Bioresponsive matrices in drug delivery
Jin-Oh You, Dariela Almeda, George JC Ye, Debra T Auguste Journal of Biological Engineering 2010, 4:15 (29 November 2010)
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7.
3829 Accesses
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TinkerCell: modular CAD tool for synthetic biology
Deepak Chandran, Frank T Bergmann, Herbert M Sauro Journal of Biological Engineering 2009, 3:19 (29 October 2009)
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8.
3478 Accesses
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System Integration - A Major Step toward Lab on a Chip
Mandy LY Sin, Jian Gao, Joseph C Liao, Pak Wong Journal of Biological Engineering 2011, 5:6 (25 May 2011)
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9.
3302 Accesses
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Insulation of a synthetic hydrogen metabolism circuit in bacteria
Christina M Agapakis, Daniel C Ducat, Patrick M Boyle, Edwin H Wintermute, Jeffrey C Way, Pamela A Silver Journal of Biological Engineering 2010, 4:3 (25 February 2010)
Abstract | Full text | PDF | PubMed
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10.
3297 Accesses
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Chitosan nanoparticle-based neuronal membrane sealing and neuroprotection following acrolein-induced cell injury
Youngnam Cho, Riyi Shi, Richard Ben Borgens Journal of Biological Engineering 2010, 4:2 (29 January 2010)
Abstract | Full text | PDF | PubMed
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11.
3174 Accesses
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Biological approaches for addressing the grand challenge of providing access to clean drinking water
Mark R Riley, Charles P Gerba, Menachem Elimelech Journal of Biological Engineering 2011, 5:2 (31 March 2011)
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12.
3149 Accesses
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Enhanced production of bacterial cellulose by using a biofilm reactor and its material property analysis
Kuan-Chen Cheng, Jeff M Catchmark, Ali Demirci Journal of Biological Engineering 2009, 3:12 (24 July 2009)
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13.
2793 Accesses
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Characterization of a synthetic bacterial self-destruction device for programmed cell death and for recombinant proteins release
Lorenzo Pasotti, Susanna Zucca, Manuel Lupotto, Maria Cusella De Angelis, Paolo Magni Journal of Biological Engineering 2011, 5:8 (7 June 2011)
Abstract | Full text | PDF | PubMed
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14.
2755 Accesses
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BglBrick vectors and datasheets: A synthetic biology platform for gene expression
Taek Lee, Rachel A Krupa, Fuzhong Zhang, Meghdad Hajimorad, William J Holtz, Nilu Prasad, Sung Lee, Jay D Keasling Journal of Biological Engineering 2011, 5:12 (20 September 2011)
Abstract | Full text | PDF | PubMed
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15.
2690 Accesses
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A framework and model system to investigate linear system behavior in Escherichia coli
Meghdad Hajimorad, Paul R Gray, Jay D Keasling Journal of Biological Engineering 2011, 5:3 (22 April 2011)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
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16.
2583 Accesses
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Designing and engineering evolutionary robust genetic circuits
Sean C Sleight, Bryan A Bartley, Jane A Lieviant, Herbert M Sauro Journal of Biological Engineering 2010, 4:12 (1 November 2010)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
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17.
2498 Accesses
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A synthetic system links FeFe-hydrogenases to essential E. coli sulfur metabolism
Buz Barstow, Christina M Agapakis, Patrick M Boyle, Gerald Grandl, Pamela A Silver, Edwin H Wintermute Journal of Biological Engineering 2011, 5:7 (26 May 2011)
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18.
2393 Accesses
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Introduction of customized inserts for streamlined assembly and optimization of BioBrick synthetic genetic circuits
Julie E Norville, Ratmir Derda, Saurabh Gupta, Kelly A Drinkwater, Angela M Belcher, Andres E Leschziner, Thomas F Knight Journal of Biological Engineering 2010, 4:17 (20 December 2010)
Abstract | Full text | PDF | PubMed
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19.
2361 Accesses
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A switchable light-input, light-output system modelled and constructed in yeast
Oxana Sorokina, Anita Kapus, Kata Terecskei, Laura E Dixon, Laszlo Kozma-Bognar, Ferenc Nagy, Andrew J Millar Journal of Biological Engineering 2009, 3:15 (17 September 2009)
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20.
2277 Accesses
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A synthetic three-color scaffold for monitoring genetic regulation and noise
Robert Cox, Mary J Dunlop, Michael B Elowitz Journal of Biological Engineering 2010, 4:10 (21 July 2010)
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21.
2220 Accesses
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Production of lentiviral vectors with enhanced efficiency to target dendritic cells by attenuating mannosidase activity of mammalian cells
April Tai, Steven Froelich, Kye-Il Joo, Pin Wang Journal of Biological Engineering 2011, 5:1 (28 January 2011)
Abstract | Full text | PDF | PubMed
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22.
2214 Accesses
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A Metabolic Biofuel Cell: Conversion of Human Leukocyte Metabolic Activity to Electrical Currents
Gusphyl A Justin, Yingze Zhang, X Tracy Cui, Charles W Bradberry, Mingui Sun, Robert J Sclabassi Journal of Biological Engineering 2011, 5:5 (10 May 2011)
Abstract | Full text | PDF | PubMed
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23.
2186 Accesses
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BglBricks: A flexible standard for biological part assembly
J Christopher Anderson, John E Dueber, Mariana Leguia, Gabriel C Wu, Jonathan A Goler, Adam P Arkin, Jay D Keasling Journal of Biological Engineering 2010, 4:1 (20 January 2010)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
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24.
2004 Accesses
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A co-fermentation strategy to consume sugar mixtures effectively
Mark A Eiteman, Sarah A Lee, Elliot Altman Journal of Biological Engineering 2008, 2:3 (27 February 2008)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
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25.
1976 Accesses
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Four suggestions for addressing public concern regarding synthetic biology
Alex Hatch Journal of Biological Engineering 2010, 4:7 (9 June 2010)
Abstract | Full text | PDF | PubMed
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