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1.

52177
Accesses

Research   Open Access Highly Accessed

Solving a Hamiltonian Path Problem with a bacterial computer

Jordan Baumgardner, Karen Acker, Oyinade Adefuye, Samuel Crowley, Will DeLoache, James O Dickson, Lane Heard, Andrew T Martens, Nickolaus Morton, Michelle Ritter, Amber Shoecraft, Jessica Treece, Matthew Unzicker, Amanda Valencia, Mike Waters, A Malcolm Campbell, Laurie J Heyer, Jeffrey L Poet, Todd T Eckdahl Journal of Biological Engineering 2009, 3:11 (24 July 2009)

Abstract | Full text | PDF | PubMed | F1000 Biology |  Editor’s summary

E. coli cells can be engineered to evaluate possible combinations of expressed genes and determine which is correct given a predetermined outcome, similar to the mathematical Hamiltonian path problem, providing proof of concept for bacterial computers solving other NP-complete problems.

2.

43019
Accesses

Research   Open Access Highly Accessed

Engineering bacteria to solve the Burnt Pancake Problem

Karmella A Haynes, Marian L Broderick, Adam D Brown, Trevor L Butner, James O Dickson, W Lance Harden, Lane H Heard, Eric L Jessen, Kelly J Malloy, Brad J Ogden, Sabriya Rosemond, Samantha Simpson, Erin Zwack, A Malcolm Campbell, Todd T Eckdahl, Laurie J Heyer, Jeffrey L Poet Journal of Biological Engineering 2008, 2:8 (20 May 2008)

Abstract | Full text | PDF | PubMed | 1 comment |  Editor’s summary

E. coli cells can be engineered to sort DNA fragments into a specific order and orientation, similar to the mathematical burnt pancake problem, providing a flexible new tool for manipulating transgenic DNA in vivo.

3.

27886
Accesses

Methodology   Open Access Highly Accessed

Engineering BioBrick vectors from BioBrick parts

Reshma P Shetty, Drew Endy, Thomas F Knight Journal of Biological Engineering 2008, 2:5 (14 April 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

4.

19256
Accesses

Methodology   Open Access Highly Accessed

Measuring the activity of BioBrick promoters using an in vivo reference standard

Jason R Kelly, Adam J Rubin, Joseph H Davis, Caroline M Ajo-Franklin, John Cumbers, Michael J Czar, Kim de Mora, Aaron L Glieberman, Dileep D Monie, Drew Endy Journal of Biological Engineering 2009, 3:4 (20 March 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

5.

16857
Accesses

Research   Open Access Highly Accessed

TinkerCell: modular CAD tool for synthetic biology

Deepak Chandran, Frank T Bergmann, Herbert M Sauro Journal of Biological Engineering 2009, 3:19 (29 October 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

6.

15727
Accesses

Research   Open Access Highly Accessed

Antimicrobial activities of commercial nanoparticles against an environmental soil microbe, Pseudomonas putida KT2440

Priyanka Gajjar, Brian Pettee, David W Britt, Wenjie Huang, William P Johnson, Anne J Anderson Journal of Biological Engineering 2009, 3:9 (26 June 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

7.

13565
Accesses

Research   Open Access Highly Accessed

Insulation of a synthetic hydrogen metabolism circuit in bacteria

Christina M Agapakis, Daniel C Ducat, Patrick M Boyle, Edwin H Wintermute, Jeffrey C Way, Pamela A Silver Journal of Biological Engineering 2010, 4:3 (25 February 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

8.

12395
Accesses

Research   Open Access Highly Accessed

Enhanced production of bacterial cellulose by using a biofilm reactor and its material property analysis

Kuan-Chen Cheng, Jeff M Catchmark, Ali Demirci Journal of Biological Engineering 2009, 3:12 (24 July 2009)

Abstract | Full text | PDF | PubMed

9.

11755
Accesses

Research   Open Access Highly Accessed

Chitosan nanoparticle-based neuronal membrane sealing and neuroprotection following acrolein-induced cell injury

Youngnam Cho, Riyi Shi, Richard Ben Borgens Journal of Biological Engineering 2010, 4:2 (29 January 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

10.

10251
Accesses

Research   Open Access Highly Accessed

Engineered cell-cell communication via DNA messaging

Monica E Ortiz, Drew Endy Journal of Biological Engineering 2012, 6:16 (7 September 2012)

Abstract | Full text | PDF | PubMed

11.

9956
Accesses

Research   Open Access

A co-fermentation strategy to consume sugar mixtures effectively

Mark A Eiteman, Sarah A Lee, Elliot Altman Journal of Biological Engineering 2008, 2:3 (27 February 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

12.

9917
Accesses

Review   Open Access

Authentic teaching and learning through synthetic biology

Natalie Kuldell Journal of Biological Engineering 2007, 1:8 (27 December 2007)

Abstract | Full text | PDF | PubMed | 1 comment

13.

9392
Accesses

Review   Open Access Highly Accessed

Bioresponsive matrices in drug delivery

Jin-Oh You, Dariela Almeda, George JC Ye, Debra T Auguste Journal of Biological Engineering 2010, 4:15 (29 November 2010)

Abstract | Full text | PDF | PubMed

14.

8874
Accesses

Research   Open Access

Amyloglucosidase enzymatic reactivity inside lipid vesicles

Mian Li, Michael J Hanford, Jin-Woo Kim, Tonya L Peeples Journal of Biological Engineering 2007, 1:4 (10 October 2007)

Abstract | Full text | PDF | PubMed

15.

8783
Accesses

Research   Open Access

Fractionation of the rice bran layer and quantification of vitamin E, oryzanol, protein, and rice bran saccharide

Rebecca Schramm, Alicia Abadie, Na Hua, Zhimin Xu, Marybeth Lima Journal of Biological Engineering 2007, 1:9 (28 December 2007)

Abstract | Full text | PDF | PubMed

16.

8705
Accesses

Methodology   Open Access

BglBricks: A flexible standard for biological part assembly

J Christopher Anderson, John E Dueber, Mariana Leguia, Gabriel C Wu, Jonathan A Goler, Adam P Arkin, Jay D Keasling Journal of Biological Engineering 2010, 4:1 (20 January 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

17.

8495
Accesses

Research   Open Access Highly Accessed

Designing and engineering evolutionary robust genetic circuits

Sean C Sleight, Bryan A Bartley, Jane A Lieviant, Herbert M Sauro Journal of Biological Engineering 2010, 4:12 (1 November 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

18.

8345
Accesses

Research   Open Access Highly Accessed

Effects of Dielectrophoresis on Growth, Viability and Immuno-reactivity of Listeria monocytogenes

Liju Yang, Padmapriya P Banada, Arun K Bhunia, Rashid Bashir Journal of Biological Engineering 2008, 2:6 (16 April 2008)

Abstract | Full text | PDF | PubMed

19.

8105
Accesses

Letters to the Editor   Open Access Highly Accessed

Synthetic biology: enormous possibility, exaggerated perils

Zachary N Russ Journal of Biological Engineering 2008, 2:7 (25 April 2008)

Abstract | Full text | PDF | PubMed

20.

8096
Accesses

Research   Open Access

Synthesizing non-natural parts from natural genomic template

Pawan K Dhar, Chaw Thwin, Kyaw Tun, Yuko Tsumoto, Sebastian Maurer-Stroh, Frank Eisenhaber, Uttam Surana Journal of Biological Engineering 2009, 3:2 (3 February 2009)

Abstract | Full text | PDF | PubMed

21.

7889
Accesses

Research   Open Access Highly Accessed

A switchable light-input, light-output system modelled and constructed in yeast

Oxana Sorokina, Anita Kapus, Kata Terecskei, Laura E Dixon, Laszlo Kozma-Bognar, Ferenc Nagy, Andrew J Millar Journal of Biological Engineering 2009, 3:15 (17 September 2009)

Abstract | Full text | PDF | PubMed

22.

7547
Accesses

Research   Open Access

Electrospun nitrocellulose and nylon: Design and fabrication of novel high performance platforms for protein blotting applications

Ashley E Manis, James R Bowman, Gary L Bowlin, David G Simpson Journal of Biological Engineering 2007, 1:2 (10 October 2007)

Abstract | Full text | PDF | PubMed

23.

7546
Accesses

Research   Open Access

Microbial inactivation and shelf life of apple juice treated with high pressure carbon dioxide

Giovanna Ferrentino, Mariacarmela Bruno, Giovanna Ferrari, Massimo Poletto, Murat O Balaban Journal of Biological Engineering 2009, 3:3 (4 February 2009)

Abstract | Full text | PDF | PubMed

24.

7395
Accesses

Methodology   Open Access Highly Accessed

BglBrick vectors and datasheets: A synthetic biology platform for gene expression

Taek Lee, Rachel A Krupa, Fuzhong Zhang, Meghdad Hajimorad, William J Holtz, Nilu Prasad, Sung Lee, Jay D Keasling Journal of Biological Engineering 2011, 5:12 (20 September 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

25.

7274
Accesses

Research   Open Access Highly Accessed

Backscattering particle immunoassays in wire-guide droplet manipulations

Jeong-Yeol Yoon, David J You Journal of Biological Engineering 2008, 2:15 (17 November 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

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