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1.
44752 Accesses
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Solving a Hamiltonian Path Problem with a bacterial computer
Jordan Baumgardner, Karen Acker, Oyinade Adefuye, Samuel Crowley, Will DeLoache, James O Dickson, Lane Heard, Andrew T Martens, Nickolaus Morton, Michelle Ritter, Amber Shoecraft, Jessica Treece, Matthew Unzicker, Amanda Valencia, Mike Waters, A Malcolm Campbell, Laurie J Heyer, Jeffrey L Poet, Todd T Eckdahl Journal of Biological Engineering 2009, 3:11 (24 July 2009)
Abstract | Full text | PDF | PubMed | F1000 Biology
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Editor’s summary
E. coli cells can be engineered to evaluate possible combinations of expressed genes and determine which is correct given a predetermined outcome, similar to the mathematical Hamiltonian path problem, providing proof of concept for bacterial computers solving other NP-complete problems.
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2.
36352 Accesses
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Engineering bacteria to solve the Burnt Pancake Problem
Karmella A Haynes, Marian L Broderick, Adam D Brown, Trevor L Butner, James O Dickson, W Lance Harden, Lane H Heard, Eric L Jessen, Kelly J Malloy, Brad J Ogden, Sabriya Rosemond, Samantha Simpson, Erin Zwack, A Malcolm Campbell, Todd T Eckdahl, Laurie J Heyer, Jeffrey L Poet Journal of Biological Engineering 2008, 2:8 (20 May 2008)
Abstract | Full text | PDF | PubMed |
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Editor’s summary
E. coli cells can be engineered to sort DNA fragments into a specific order and orientation, similar to the mathematical burnt pancake problem, providing a flexible new tool for manipulating transgenic DNA in vivo.
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3.
22399 Accesses
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Engineering BioBrick vectors from BioBrick parts
Reshma P Shetty, Drew Endy, Thomas F Knight Journal of Biological Engineering 2008, 2:5 (14 April 2008)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
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4.
13879 Accesses
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Measuring the activity of BioBrick promoters using an in vivo reference standard
Jason R Kelly, Adam J Rubin, Joseph H Davis, Caroline M Ajo-Franklin, John Cumbers, Michael J Czar, Kim de Mora, Aaron L Glieberman, Dileep D Monie, Drew Endy Journal of Biological Engineering 2009, 3:4 (20 March 2009)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
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5.
12331 Accesses
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TinkerCell: modular CAD tool for synthetic biology
Deepak Chandran, Frank T Bergmann, Herbert M Sauro Journal of Biological Engineering 2009, 3:19 (29 October 2009)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
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6.
11707 Accesses
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Antimicrobial activities of commercial nanoparticles against an environmental soil microbe, Pseudomonas putida KT2440
Priyanka Gajjar, Brian Pettee, David W Britt, Wenjie Huang, William P Johnson, Anne J Anderson Journal of Biological Engineering 2009, 3:9 (26 June 2009)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
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7.
10612 Accesses
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Insulation of a synthetic hydrogen metabolism circuit in bacteria
Christina M Agapakis, Daniel C Ducat, Patrick M Boyle, Edwin H Wintermute, Jeffrey C Way, Pamela A Silver Journal of Biological Engineering 2010, 4:3 (25 February 2010)
Abstract | Full text | PDF | PubMed
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8.
9019 Accesses
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Enhanced production of bacterial cellulose by using a biofilm reactor and its material property analysis
Kuan-Chen Cheng, Jeff M Catchmark, Ali Demirci Journal of Biological Engineering 2009, 3:12 (24 July 2009)
Abstract | Full text | PDF | PubMed
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9.
8286 Accesses
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Chitosan nanoparticle-based neuronal membrane sealing and neuroprotection following acrolein-induced cell injury
Youngnam Cho, Riyi Shi, Richard Ben Borgens Journal of Biological Engineering 2010, 4:2 (29 January 2010)
Abstract | Full text | PDF | PubMed
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10.
7947 Accesses
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A co-fermentation strategy to consume sugar mixtures effectively
Mark A Eiteman, Sarah A Lee, Elliot Altman Journal of Biological Engineering 2008, 2:3 (27 February 2008)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
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11.
7495 Accesses
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Authentic teaching and learning through synthetic biology
Natalie Kuldell Journal of Biological Engineering 2007, 1:8 (27 December 2007)
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12.
7139 Accesses
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Amyloglucosidase enzymatic reactivity inside lipid vesicles
Mian Li, Michael J Hanford, Jin-Woo Kim, Tonya L Peeples Journal of Biological Engineering 2007, 1:4 (10 October 2007)
Abstract | Full text | PDF | PubMed
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13.
6928 Accesses
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Synthetic biology: enormous possibility, exaggerated perils
Zachary N Russ Journal of Biological Engineering 2008, 2:7 (25 April 2008)
Abstract | Full text | PDF | PubMed
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14.
6909 Accesses
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Effects of Dielectrophoresis on Growth, Viability and Immuno-reactivity of Listeria monocytogenes
Liju Yang, Padmapriya P Banada, Arun K Bhunia, Rashid Bashir Journal of Biological Engineering 2008, 2:6 (16 April 2008)
Abstract | Full text | PDF | PubMed
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15.
6497 Accesses
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Fractionation of the rice bran layer and quantification of vitamin E, oryzanol, protein, and rice bran saccharide
Rebecca Schramm, Alicia Abadie, Na Hua, Zhimin Xu, Marybeth Lima Journal of Biological Engineering 2007, 1:9 (28 December 2007)
Abstract | Full text | PDF | PubMed
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16.
6402 Accesses
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Synthesizing non-natural parts from natural genomic template
Pawan K Dhar, Chaw Thwin, Kyaw Tun, Yuko Tsumoto, Sebastian Maurer-Stroh, Frank Eisenhaber, Uttam Surana Journal of Biological Engineering 2009, 3:2 (3 February 2009)
Abstract | Full text | PDF | PubMed
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17.
6373 Accesses
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Electrospun nitrocellulose and nylon: Design and fabrication of novel high performance platforms for protein blotting applications
Ashley E Manis, James R Bowman, Gary L Bowlin, David G Simpson Journal of Biological Engineering 2007, 1:2 (10 October 2007)
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18.
6234 Accesses
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BglBricks: A flexible standard for biological part assembly
J Christopher Anderson, John E Dueber, Mariana Leguia, Gabriel C Wu, Jonathan A Goler, Adam P Arkin, Jay D Keasling Journal of Biological Engineering 2010, 4:1 (20 January 2010)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
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19.
6169 Accesses
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Designing and engineering evolutionary robust genetic circuits
Sean C Sleight, Bryan A Bartley, Jane A Lieviant, Herbert M Sauro Journal of Biological Engineering 2010, 4:12 (1 November 2010)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
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20.
6131 Accesses
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Backscattering particle immunoassays in wire-guide droplet manipulations
Jeong-Yeol Yoon, David J You Journal of Biological Engineering 2008, 2:15 (17 November 2008)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
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21.
6064 Accesses
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A switchable light-input, light-output system modelled and constructed in yeast
Oxana Sorokina, Anita Kapus, Kata Terecskei, Laura E Dixon, Laszlo Kozma-Bognar, Ferenc Nagy, Andrew J Millar Journal of Biological Engineering 2009, 3:15 (17 September 2009)
Abstract | Full text | PDF | PubMed
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22.
5915 Accesses
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Bioresponsive matrices in drug delivery
Jin-Oh You, Dariela Almeda, George JC Ye, Debra T Auguste Journal of Biological Engineering 2010, 4:15 (29 November 2010)
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23.
5614 Accesses
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Behavioral recovery from traumatic brain injury after membrane reconstruction using polyethylene glycol
Andrew O Koob, Julia M Colby, Richard B Borgens Journal of Biological Engineering 2008, 2:9 (27 June 2008)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
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Editor’s summary
Treatment with polyethylene glycol (PEG) during a critical four hour window following traumatic brain injury or spinal cord injury provides neuroprotection and enhances functional recovery.
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24.
5524 Accesses
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Microbial inactivation and shelf life of apple juice treated with high pressure carbon dioxide
Giovanna Ferrentino, Mariacarmela Bruno, Giovanna Ferrari, Massimo Poletto, Murat O Balaban Journal of Biological Engineering 2009, 3:3 (4 February 2009)
Abstract | Full text | PDF | PubMed
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25.
5412 Accesses
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Cellular automata simulation of topological effects on the dynamics of feed-forward motifs
Advait A Apte, John W Cain, Danail G Bonchev, Stephen S Fong Journal of Biological Engineering 2008, 2:2 (27 February 2008)
Abstract | Full text | PDF | PubMed
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