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1.
775 Accesses
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Solving a Hamiltonian Path Problem with a bacterial computer
Jordan Baumgardner, Karen Acker, Oyinade Adefuye, Samuel Crowley, Will DeLoache, James O Dickson, Lane Heard, Andrew T Martens, Nickolaus Morton, Michelle Ritter, Amber Shoecraft, Jessica Treece, Matthew Unzicker, Amanda Valencia, Mike Waters, A Malcolm Campbell, Laurie J Heyer, Jeffrey L Poet, Todd T Eckdahl Journal of Biological Engineering 2009, 3:11 (24 July 2009)
Abstract | Full text | PDF | PubMed | F1000 Biology
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Editor’s summary
E. coli cells can be engineered to evaluate possible combinations of expressed genes and determine which is correct given a predetermined outcome, similar to the mathematical Hamiltonian path problem, providing proof of concept for bacterial computers solving other NP-complete problems.
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2.
608 Accesses
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Engineering bacteria to solve the Burnt Pancake Problem
Karmella A Haynes, Marian L Broderick, Adam D Brown, Trevor L Butner, James O Dickson, W Lance Harden, Lane H Heard, Eric L Jessen, Kelly J Malloy, Brad J Ogden, Sabriya Rosemond, Samantha Simpson, Erin Zwack, A Malcolm Campbell, Todd T Eckdahl, Laurie J Heyer, Jeffrey L Poet Journal of Biological Engineering 2008, 2:8 (20 May 2008)
Abstract | Full text | PDF | PubMed |
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Editor’s summary
E. coli cells can be engineered to sort DNA fragments into a specific order and orientation, similar to the mathematical burnt pancake problem, providing a flexible new tool for manipulating transgenic DNA in vivo.
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3.
514 Accesses
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Antimicrobial activities of commercial nanoparticles against an environmental soil microbe, Pseudomonas putida KT2440
Priyanka Gajjar, Brian Pettee, David W Britt, Wenjie Huang, William P Johnson, Anne J Anderson Journal of Biological Engineering 2009, 3:9 (26 June 2009)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
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4.
493 Accesses
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Engineering BioBrick vectors from BioBrick parts
Reshma P Shetty, Drew Endy, Thomas F Knight Journal of Biological Engineering 2008, 2:5 (14 April 2008)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
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5.
463 Accesses
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Measuring the activity of BioBrick promoters using an in vivo reference standard
Jason R Kelly, Adam J Rubin, Joseph H Davis, Caroline M Ajo-Franklin, John Cumbers, Michael J Czar, Kim de Mora, Aaron L Glieberman, Dileep D Monie, Drew Endy Journal of Biological Engineering 2009, 3:4 (20 March 2009)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
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6.
343 Accesses
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TinkerCell: modular CAD tool for synthetic biology
Deepak Chandran, Frank T Bergmann, Herbert M Sauro Journal of Biological Engineering 2009, 3:19 (29 October 2009)
Abstract | Full text | PDF | PubMed
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7.
342 Accesses
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Detection and quantification of poliovirus infection using FTIR spectroscopy and cell culture
Felipe T Lee-Montiel, Kelly A Reynolds, Mark R Riley Journal of Biological Engineering 2011, 5:16 (5 December 2011)
Abstract | Full text | PDF | PubMed
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8.
329 Accesses
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Bioresponsive matrices in drug delivery
Jin-Oh You, Dariela Almeda, George JC Ye, Debra T Auguste Journal of Biological Engineering 2010, 4:15 (29 November 2010)
Abstract | Full text | PDF | PubMed
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9.
324 Accesses
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System Integration - A Major Step toward Lab on a Chip
Mandy LY Sin, Jian Gao, Joseph C Liao, Pak Wong Journal of Biological Engineering 2011, 5:6 (25 May 2011)
Abstract | Full text | PDF | PubMed
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10.
309 Accesses
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Chitosan nanoparticle-based neuronal membrane sealing and neuroprotection following acrolein-induced cell injury
Youngnam Cho, Riyi Shi, Richard Ben Borgens Journal of Biological Engineering 2010, 4:2 (29 January 2010)
Abstract | Full text | PDF | PubMed
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11.
303 Accesses
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Enhanced production of bacterial cellulose by using a biofilm reactor and its material property analysis
Kuan-Chen Cheng, Jeff M Catchmark, Ali Demirci Journal of Biological Engineering 2009, 3:12 (24 July 2009)
Abstract | Full text | PDF | PubMed
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12.
279 Accesses
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Addressing the Grand Challenge of atmospheric carbon dioxide: geologic sequestration vs. biological recycling
Ben J Stuart Journal of Biological Engineering 2011, 5:14 (2 November 2011)
Abstract | Full text | PDF | PubMed
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13.
273 Accesses
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Insulation of a synthetic hydrogen metabolism circuit in bacteria
Christina M Agapakis, Daniel C Ducat, Patrick M Boyle, Edwin H Wintermute, Jeffrey C Way, Pamela A Silver Journal of Biological Engineering 2010, 4:3 (25 February 2010)
Abstract | Full text | PDF | PubMed
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14.
270 Accesses
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Amplified insert assembly: an optimized approach to standard assembly of BioBrickTM genetic circuits
Michael A. Speer, Tom L. Richard Journal of Biological Engineering 2011, 5:17 (16 December 2011)
Abstract | Provisional PDF
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15.
260 Accesses
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BglBrick vectors and datasheets: A synthetic biology platform for gene expression
Taek Lee, Rachel A Krupa, Fuzhong Zhang, Meghdad Hajimorad, William J Holtz, Nilu Prasad, Sung Lee, Jay D Keasling Journal of Biological Engineering 2011, 5:12 (20 September 2011)
Abstract | Full text | PDF | PubMed
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16.
252 Accesses
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A synthetic system links FeFe-hydrogenases to essential E. coli sulfur metabolism
Buz Barstow, Christina M Agapakis, Patrick M Boyle, Gerald Grandl, Pamela A Silver, Edwin H Wintermute Journal of Biological Engineering 2011, 5:7 (26 May 2011)
Abstract | Full text | PDF | PubMed
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17.
237 Accesses
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Fluorometric determination of ethidium bromide efflux kinetics in Escherichia coli
Laura Paixão, Liliana Rodrigues, Isabel Couto, Marta Martins, Pedro Fernandes, Carla CCR de Carvalho, Gabriel A Monteiro, Filipe Sansonetty, Leonard Amaral, Miguel Viveiros Journal of Biological Engineering 2009, 3:18 (16 October 2009)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
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18.
220 Accesses
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Regeneration of Centella asiatica plants from non-embryogenic cell lines and evaluation of antibacterial and antifungal properties of regenerated calli and plants
Yamin Bibi, Muhammad Zia, Sobia Nisa, Darima Habib, Abdul Waheed, Fayyaz M Chaudhary Journal of Biological Engineering 2011, 5:13 (12 October 2011)
Abstract | Full text | PDF | PubMed
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19.
210 Accesses
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BglBricks: A flexible standard for biological part assembly
J Christopher Anderson, John E Dueber, Mariana Leguia, Gabriel C Wu, Jonathan A Goler, Adam P Arkin, Jay D Keasling Journal of Biological Engineering 2010, 4:1 (20 January 2010)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
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20.
195 Accesses
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Authentic teaching and learning through synthetic biology
Natalie Kuldell Journal of Biological Engineering 2007, 1:8 (27 December 2007)
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21.
191 Accesses
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Soluble aggregates of the amyloid-β peptide are trapped by serum albumin to enhance amyloid-β activation of endothelial cells
Adriana A Reyes Barcelo, Francisco J Gonzalez-Velasquez, Melissa A Moss Journal of Biological Engineering 2009, 3:5 (27 April 2009)
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22.
189 Accesses
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A Metabolic Biofuel Cell: Conversion of Human Leukocyte Metabolic Activity to Electrical Currents
Gusphyl A Justin, Yingze Zhang, X Tracy Cui, Charles W Bradberry, Mingui Sun, Robert J Sclabassi Journal of Biological Engineering 2011, 5:5 (10 May 2011)
Abstract | Full text | PDF | PubMed
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23.
179 Accesses
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Biological approaches for addressing the grand challenge of providing access to clean drinking water
Mark R Riley, Charles P Gerba, Menachem Elimelech Journal of Biological Engineering 2011, 5:2 (31 March 2011)
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24.
171 Accesses
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A co-fermentation strategy to consume sugar mixtures effectively
Mark A Eiteman, Sarah A Lee, Elliot Altman Journal of Biological Engineering 2008, 2:3 (27 February 2008)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
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25.
169 Accesses
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Introduction of customized inserts for streamlined assembly and optimization of BioBrick synthetic genetic circuits
Julie E Norville, Ratmir Derda, Saurabh Gupta, Kelly A Drinkwater, Angela M Belcher, Andres E Leschziner, Thomas F Knight Journal of Biological Engineering 2010, 4:17 (20 December 2010)
Abstract | Full text | PDF | PubMed
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